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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005909.1_203_479_R

Intron Information:

Intron Rank:
139014
Intron Class:
major
Intron Phase:
Intron Coordinates:
203 - 479
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TCTGTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCATCCTCACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
74
0.54
0.9
65.2
41.2
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
47
-0.3
1.9
49.07
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022270
Chromosome:
PEDO01005909.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019311
21 - 1323
1303