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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005914.1_1820_2367_F

Intron Information:

Intron Rank:
135344
Intron Class:
major
Intron Phase:
Intron Coordinates:
1820 - 2367
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTGAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
0.9
71.9
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
35.1
-1.7
3.2
45
45.5
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022817
Chromosome:
PEDO01005914.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020520
1591 - 2926
1336