About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005930.1_517_951_F

Intron Information:

Intron Rank:
138964
Intron Class:
major
Intron Phase:
Intron Coordinates:
517 - 951
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGCCC
5'SS Class:
major
3'SS Sequence:
CCCCGCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
CTGACCCCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
55.4
40.2
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
68.2
0.41
0.8
64.3
31
Minor 5ss
31.1
-2.2
3.4
39.5
41.3
Minor BPS
48
-0.1
2
60.3
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024804
Chromosome:
PEDO01005930.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029629
21 - 1596
1576