About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005930.1_985_1080_F

Intron Information:

Intron Rank:
138968
Intron Class:
major
Intron Phase:
Intron Coordinates:
985 - 1080
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGCGAG
5'SS Class:
major
3'SS Sequence:
CCTAAAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
TGACCCTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
61
39.7
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
64.6
0.33
1
55.7
38.6
Minor 5ss
36.3
-1.5
3.3
45.4
49.7
Minor BPS
52.9
0.07
1.8
63.33
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024804
Chromosome:
PEDO01005930.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040396
21 - 1596
1576