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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005933.1_1573_1667_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1573 - 1667
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
TGCCCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGAAAT
U12 Branch Point Sequence:
AGGGTGTGAAAT
Flanking Amino Acid:
LRLGRLKDEGRAPPEAVSML
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
49.7
-0
1.4
59
44.6
Major PPT
70.6
0.46
0.8
61.6
34.9
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
40.1
-0.6
2.1
52.66
42.1

Associated Gene:

Gene:
GCDH
Ensembl Gene ID:
ENSAPLG00000030336
Chromosome:
PEDO01005933.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023504
21 - 2280
2260