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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005933.1_184_260_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
184 - 260
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCCGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCTCACTGACCC
Flanking Amino Acid:
AQRDRFLPPLARGELLGCFG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
65.8
0.36
1.1
60.7
40.2
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
44.9
-0.4
1.9
53.54
43.8

Associated Gene:

Gene:
GCDH
Ensembl Gene ID:
ENSAPLG00000030336
Chromosome:
PEDO01005933.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023504
21 - 2280
2260