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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005933.1_2832_3495_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2832 - 3495
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
GTTTTGTTTCCT
Flanking Amino Acid:
SGFRDSLLLKVSDLAEQLEE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
77.2
0.61
1
73.7
36.9
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
37.6
-0.8
3.8
71.99
44.9

Associated Gene:

Gene:
SYCE2
Ensembl Gene ID:
ENSAPLG00000019816
Chromosome:
PEDO01005933.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030397
2637 - 5206
2570