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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005939.1_629_1871_R

Intron Information:

Intron Rank:
143654
Intron Class:
major
Intron Phase:
Intron Coordinates:
629 - 1871
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTGCATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTCCCTGATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.5
0.69
0.9
73.9
35.4
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
48.7
-0
2
71.48
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024617
Chromosome:
PEDO01005939.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040154
21 - 2961
2941