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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005960.1_2600_2791_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2600 - 2791
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGATGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCAATAACT
Flanking Amino Acid:
WPRLTKERAKLNWLSVDFNN
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
72.1
0.5
1.1
65.3
44.7
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
65
0.55
1.9
86.43
39.1

Associated Gene:

Gene:
PTGES3
Ensembl Gene ID:
ENSAPLG00000009186
Chromosome:
PEDO01005960.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009582
1305 - 5395
4091
ENSAPLT00000048330
401 - 5395
4995
ENSAPLT00000024267
21 - 4920
4900
ENSAPLT00000018777
1055 - 5395
4341