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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005960.1_2882_3579_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2882 - 3579
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGGAA
5'SS Class:
major
3'SS Sequence:
CTTTCTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CTTTCTTGAACA
Flanking Amino Acid:
DMSNFDRFSEMMNNMGGDDD
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.3
35.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.7
0.58
1
72.9
36.2
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
73.3
0.73
1.4
80.01
36.1

Associated Gene:

Gene:
PTGES3
Ensembl Gene ID:
ENSAPLG00000009186
Chromosome:
PEDO01005960.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024267
21 - 4920
4900
ENSAPLT00000018777
1055 - 5395
4341
ENSAPLT00000009582
1305 - 5395
4091
ENSAPLT00000048330
401 - 5395
4995