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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005960.1_4047_4601_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4047 - 4601
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATCTCTTACTT
Flanking Amino Acid:
DDDSPDSDDEKMPDLDRCNS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.6
0.64
0.7
70.6
30.5
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
58.3
0.34
1.6
72.6
38.4

Associated Gene:

Gene:
PTGES3
Ensembl Gene ID:
ENSAPLG00000009186
Chromosome:
PEDO01005960.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024267
21 - 4920
4900
ENSAPLT00000018777
1055 - 5395
4341
ENSAPLT00000009582
1305 - 5395
4091
ENSAPLT00000048330
401 - 5395
4995