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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005982.1_875_1226_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
875 - 1226
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTCCTTCTACA
Flanking Amino Acid:
LVLALVVALIVVCLQSRSSH
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
85.3
0.79
0.7
79.7
25.8
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
49.8
-0
1.9
64.99
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019260
Chromosome:
PEDO01005982.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035437
21 - 2189
2169