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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005984.1_710_818_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
710 - 818
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTCCCCTGACCC
Flanking Amino Acid:
YRLQITSTYEYLELRFNKTV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
66.5
0.37
0.8
56.8
33.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
49.5
-0
1.8
60.44
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016558
Chromosome:
PEDO01005984.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042009
211 - 1040
830