Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005990.1_4221_5439_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4221 - 5439

Intron Length:

1219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGCAAG

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACGTAAT

U12 Branch Point Sequence:

AAATACGTAATG

Flanking Amino Acid:

PGSQDEVFNRASGCFNLRAL

Intron Amino Acid Position:

362

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

70.6

41.3

Major BPS

0.32

1.2

63.6

40.3

Major PPT

0.83

0.7

84.5

23.4

Minor 5ss

44.8

-0.6

2.6

56.4

Minor BPS

46.7

-0.3

2.2

53.05

41.5

Associated Gene:

Gene:

BEND4

Ensembl Gene ID:

ENSAPLG00000008421

Chromosome:

PEDO01005990.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032651

3297 - 25213

21917