Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01005990.1_9033_12708_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9033 - 12708

Intron Length:

3676

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTATGC

5'SS Class:

major

3'SS Sequence:

TTCATTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

AAATATTTCATT

Flanking Amino Acid:

VPQPADHPTEGSKQLLNNYP

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

59.7

40.5

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

87.6

0.85

0.8

80.3

37.1

Minor 5ss

-1.5

3.3

50.9

45.6

Minor BPS

48.1

-0

1.9

65.28

39.4

Associated Gene:

Gene:

BEND4

Ensembl Gene ID:

ENSAPLG00000008421

Chromosome:

PEDO01005990.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032651

3297 - 25213

21917

ENSAPLT00000008741

364 - 25213

24850