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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006017.1_1627_1858_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1627 - 1858
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGGCAT
U12 Branch Point Sequence:
TGCCGGGCATCT
Flanking Amino Acid:
KQAAEEERYFREKEREQLAA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
43
-0.4
1.5
46.5
47
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
28.1
-1.5
2.6
45.81
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027540
Chromosome:
PEDO01006017.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047460
1319 - 2138
820