Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_21628_21723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21628 - 21723

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTGGC

5'SS Class:

major

3'SS Sequence:

TCTCTTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCAAAA

U12 Branch Point Sequence:

TTTGTCCGAGCA

Flanking Amino Acid:

DVYAVHHMVWSVEEGSPAQE

Intron Amino Acid Position:

996

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

64.7

Major BPS

47.7

-0.1

Major PPT

84.8

0.78

0.8

79.9

32.1

Minor 5ss

31.2

-2.1

3.4

34.3

Minor BPS

45.7

-0.3

64.63

41.7

Associated Gene:

Gene:

MAST3

Ensembl Gene ID:

ENSAPLG00000012366

Chromosome:

PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036644

19622 - 31544

11923

ENSAPLT00000012914

19622 - 64005

44384