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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_22593_22740_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22593 - 22740
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GGCTCCCTCCCT
Flanking Amino Acid:
DRSRLSGAEPRLRSWTSCSS
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
79.1
0.66
0.7
73
25.2
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
36
-1
3.7
61.99
47.3

Associated Gene:

Gene:
MAST3
Ensembl Gene ID:
ENSAPLG00000012366
Chromosome:
PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036644
19622 - 31544
11923
ENSAPLT00000012914
19622 - 64005
44384