Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_22896_23013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22896 - 23013

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCTTGAT

5'SS Class:

major

3'SS Sequence:

ACCTATTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTCAA

U12 Branch Point Sequence:

AACCACTCAATT

Flanking Amino Acid:

FSSCSHRFSKVYSSSEYLAT

Intron Amino Acid Position:

724

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

70.5

35.3

Major BPS

65.6

0.39

0.9

67.3

29.6

Major PPT

70.6

0.46

0.9

61.6

39.1

Minor 5ss

27.9

-2.5

3.3

40.3

45.8

Minor BPS

48.6

-0

1.7

62.79

Associated Gene:

Gene:

MAST3

Ensembl Gene ID:

ENSAPLG00000012366

Chromosome:

PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036644

19622 - 31544

11923

ENSAPLT00000012914

19622 - 64005

44384