Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_25157_25418_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25157 - 25418

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCTGG

5'SS Class:

major

3'SS Sequence:

GGCTCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAG

U12 Branch Point Sequence:

GTGTTCTGAGGT

Flanking Amino Acid:

TIKLISNGAYGAVYLVRHRE

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

56.7

Major BPS

67.4

0.43

1.5

65.3

43.7

Major PPT

66.6

0.37

0.9

57.9

38.5

Minor 5ss

37.4

-1.4

38.2

46.7

Minor BPS

46.9

-0.1

65.09

45.3

Associated Gene:

Gene:

MAST3

Ensembl Gene ID:

ENSAPLG00000012366

Chromosome:

PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036644

19622 - 31544

11923

ENSAPLT00000012914

19622 - 64005

44384