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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_31012_31161_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31012 - 31161
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CATCGCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TGCTTCCCATCG
Flanking Amino Acid:
STSVNFPFARSHAPRTDRAD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.3
35.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
72.8
0.51
0.9
61.9
39.6
Minor 5ss
32.2
-2
3.3
41.8
45.1
Minor BPS
42.2
-0.7
2
48.65
44.7

Associated Gene:

Gene:
MAST3
Ensembl Gene ID:
ENSAPLG00000012366
Chromosome:
PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012914
19622 - 64005
44384