About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_31235_31405_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31235 - 31405
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
CTGTGATTAATT
Flanking Amino Acid:
RPLSPLSVPTAGSSPLDSPR
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64
42.4
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
28.1
-2.5
3.4
29
43.5
Minor BPS
53.1
0.18
2.1
72.52
44.9

Associated Gene:

Gene:
MAST3
Ensembl Gene ID:
ENSAPLG00000012366
Chromosome:
PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012914
19622 - 64005
44384