Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_72061_72145_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72061 - 72145

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

GTGCTCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAA

U12 Branch Point Sequence:

TGCTCCCCACAG

Flanking Amino Acid:

YSHGYGLGPKDEDAVVRGLS

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.9

29.7

Major BPS

57.9

0.2

1.4

63.4

44.3

Major PPT

68.9

0.43

0.9

61.6

Minor 5ss

25.3

-2.8

3.1

30.4

42.9

Minor BPS

40.5

-0.8

2.1

46.57

45.5

Associated Gene:

Gene:

PEX11G

Ensembl Gene ID:

ENSAPLG00000025474

Chromosome:

PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027273

71309 - 73562

2254