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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006020.1_72510_72632_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72510 - 72632
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TTGCTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTGCTTTCAACA
Flanking Amino Acid:
RLRKKLRQQKCTSSSQDRKK
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.1
0.61
0.9
73.6
35.7
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
58.5
0.26
1.5
68.45
38.1

Associated Gene:

Gene:
PEX11G
Ensembl Gene ID:
ENSAPLG00000025474
Chromosome:
PEDO01006020.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027273
71309 - 73562
2254