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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006041.1_123_455_F

Intron Information:

Intron Rank:
141733
Intron Class:
major
Intron Phase:
Intron Coordinates:
123 - 455
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCACGTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
88.4
0.86
0.7
83.8
24.4
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
44.6
-0.4
2.2
51.34
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026320
Chromosome:
PEDO01006041.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042852
21 - 1595
1575