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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006045.1_2663_3055_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2663 - 3055
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TGTTGCACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GGGTCCTGAAAT
Flanking Amino Acid:
SHLVCRTAIEDKQEGRSDNS
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.6
39.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
65.2
0.34
0.9
56.1
40
Minor 5ss
33.8
-1.8
2.8
32.8
41.8
Minor BPS
60.3
0.4
1.6
72.4
43.5

Associated Gene:

Gene:
P3H1
Ensembl Gene ID:
ENSAPLG00000004260
Chromosome:
PEDO01006045.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004406
1214 - 5245
4032