Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006045.1_4451_4576_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4451 - 4576

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GTTGTGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTCCAG

U12 Branch Point Sequence:

CCTTGTCCAGCT

Flanking Amino Acid:

DVFGIPFVDPDTWTPEEVIP

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

Major BPS

45.3

-0.2

1.7

58.2

48.3

Major PPT

69.8

0.45

1.1

61.9

44.4

Minor 5ss

28.1

-2.5

3.1

35.3

41.4

Minor BPS

38.6

-0.7

2.2

56.17

46.4

Associated Gene:

Gene:

P3H1

Ensembl Gene ID:

ENSAPLG00000004260

Chromosome:

PEDO01006045.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004406

1214 - 5245

4032