About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006051.1_1454_1531_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1454 - 1531

Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGCGCCTG

5'SS Class:
major

3'SS Sequence:
CCTGTCTCTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGCTGAG

U12 Branch Point Sequence:
CGGGGCTGAGCC

Flanking Amino Acid:
MEVVSGYEAKVYSASNVELV

Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74
0.57
1.1
59.9
46.4

Major BPS
43.9
-0.3
1.6
36.8
44.4

Major PPT
79.2
0.66
0.8
72.8
32

Minor 5ss
35
-1.7
3.3
46.8
48.5

Minor BPS
39.7
-0.8
2
43.46
44

Associated Gene:

Gene:
ANKRD13D

Ensembl Gene ID:

Chromosome:
PEDO01006051.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

211 - 3664
3454