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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006051.1_2085_2167_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2085 - 2167
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GGTGCCCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CTGTGCCCACGC
Flanking Amino Acid:
RPIEVSSKVQRFKATLWLCE
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
52.8
0.06
1.1
46.8
41.5
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
33.5
-1.2
2.3
42.41
44.7

Associated Gene:

Gene:
ANKRD13D
Ensembl Gene ID:
ENSAPLG00000002830
Chromosome:
PEDO01006051.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002858
211 - 3664
3454