Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006104.1_1007_1285_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1007 - 1285

Intron Length:

279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCGC

5'SS Class:

major

3'SS Sequence:

CCCCCCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

AAAAAATTAACA

Flanking Amino Acid:

DGEFPVVESAASLHGDSWGR

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

60.9

40.7

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

72.2

0.5

0.7

64.9

23.7

Minor 5ss

29.7

-2.3

3.5

41.4

45.3

Minor BPS

49.2

-0

1.8

59.88

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018773

Chromosome:

PEDO01006104.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029671

822 - 3823

3002