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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006123.1_1558_1961_F

Intron Information:

Intron Rank:
142208
Intron Class:
major
Intron Phase:
Intron Coordinates:
1558 - 1961
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTGTTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATTGTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.7
0.69
0.8
72.8
37.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
46.5
-0.1
2.4
67.41
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026585
Chromosome:
PEDO01006123.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041098
21 - 3953
3933
ENSAPLT00000038913
21 - 3953
3933