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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006123.1_2112_2734_F

Intron Information:

Intron Rank:
142209
Intron Class:
major
Intron Phase:
Intron Coordinates:
2112 - 2734
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTGTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
77
0.61
0.9
70.6
34.8
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
61.1
0.43
1.9
78.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026585
Chromosome:
PEDO01006123.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041098
21 - 3953
3933
ENSAPLT00000038913
21 - 3953
3933