About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006123.1_3415_3503_F

Intron Information:

Intron Rank:
142215
Intron Class:
major
Intron Phase:
Intron Coordinates:
3415 - 3503
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
GTGCCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.2
0.75
0.8
76.2
37.6
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
48.1
-0
2
67.42
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026585
Chromosome:
PEDO01006123.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041098
21 - 3953
3933