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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006150.1_7426_8267_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7426 - 8267
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATCTGTGTAAAT
Flanking Amino Acid:
GGHYCGKTIQKPNYDYAVGL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
74
36.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.7
0.69
0.7
73.3
31.7
Minor 5ss
36.7
-1.5
2.6
45.3
42.8
Minor BPS
45.2
-0.2
2.4
66.8
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005561
Chromosome:
PEDO01006150.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005758
5098 - 9225
4128