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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006155.1_105_184_F

Intron Information:

Intron Rank:
137593
Intron Class:
major
Intron Phase:
Intron Coordinates:
105 - 184
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTTCCTAACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.7
45
Major BPS
72
0.55
1
71.8
31.4
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
32.3
-2
3
31
43.1
Minor BPS
59.8
0.29
2
73.88
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024099
Chromosome:
PEDO01006155.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027426
21 - 2092
2072