About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006155.1_1109_1884_F

Intron Information:

Intron Rank:
137594
Intron Class:
major
Intron Phase:
Intron Coordinates:
1109 - 1884
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
TCTCCGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GCCTCTCCATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.1
57.2
41.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
79.4
0.66
0.8
72.7
32
Minor 5ss
32.8
-2
3.5
51.7
45
Minor BPS
41.3
-0.6
2
47.59
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024099
Chromosome:
PEDO01006155.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027426
21 - 2092
2072
ENSAPLT00000030492
688 - 2092
1405