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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006155.1_304_1028_F

Intron Information:

Intron Rank:
137595
Intron Class:
minor
Intron Phase:
Intron Coordinates:
304 - 1028
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CCGCCGTGCCCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GCATCCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
57.9
0.18
1
48.6
39.2
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
78.8
0.88
1.2
76.27
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024099
Chromosome:
PEDO01006155.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027426
21 - 2092
2072