About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006160.1_140_506_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140 - 506
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTACGGGAA
5'SS Class:
major
3'SS Sequence:
CTGCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTCAC
U12 Branch Point Sequence:
CCCCCCACAGCT
Flanking Amino Acid:
ELKSRGIKDNASEIDERRVQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.4
60.4
40.6
Major BPS
46.8
-0.2
1.4
48.8
46.3
Major PPT
67.4
0.39
0.9
57.8
38.5
Minor 5ss
28.8
-2.4
3.7
35.6
42
Minor BPS
41.8
-0.5
2
54.52
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030609
Chromosome:
PEDO01006160.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019646
8 - 879
872