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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006160.1_2406_2598_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2406 - 2598

Intron Length:

193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCA

5'SS Class:

strong_major

3'SS Sequence:

GCTCCCCTCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAC

U12 Branch Point Sequence:

TTTCCCCCCACC

Flanking Amino Acid:

NTWYGEQDQAVHLWRFSGGY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

34.7

Major BPS

47.2

-0.1

52.2

32.7

Major PPT

71.3

0.48

0.8

61.4

34.9

Minor 5ss

31.2

-2.2

3.2

38.8

46.5

Minor BPS

47.5

-0.2

2.3

69.49

41.6

Associated Gene:

Gene:

NIPSNAP1

Ensembl Gene ID:

ENSAPLG00000019733

Chromosome:

PEDO01006160.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042034

1390 - 3070

1681