Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006160.1_2694_2955_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2694 - 2955

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGCCCC

5'SS Class:

major

3'SS Sequence:

GTGCCCTGAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

GTGCCCTGAGCA

Flanking Amino Acid:

PECLDAYNSLTEEVLPKLHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.38

1.3

56.7

42.7

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

59.8

0.22

1.1

54.9

40.1

Minor 5ss

35.1

-1.7

42.6

37.5

Minor BPS

51.4

0.04

1.7

63.13

42.5

Associated Gene:

Gene:

NIPSNAP1

Ensembl Gene ID:

ENSAPLG00000019733

Chromosome:

PEDO01006160.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042034

1390 - 3070

1681