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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_1325_3453_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1325 - 3453
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTCCCACT
Flanking Amino Acid:
TLTFRRSCREGICGSCAMNI
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.6
0.58
0.8
73.9
30
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
49.5
0.04
2.3
80.84
41

Associated Gene:

Gene:
SDHB
Ensembl Gene ID:
ENSAPLG00000015023
Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015686
640 - 8722
8083