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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_16421_16924_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16421 - 16924
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGCT
U12 Branch Point Sequence:
TCTTTTTGCCCT
Flanking Amino Acid:
AGLDQQDHNTRRKIYGPNLI
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
82.5
37
Major BPS
36.1
-0.8
4.3
65.3
43.7
Major PPT
79.5
0.66
0.8
73.6
31.4
Minor 5ss
36.8
-1.5
3.6
56.4
48
Minor BPS
37.9
-0.8
3.5
67.31
44.2

Associated Gene:

Gene:
ATP13A2
Ensembl Gene ID:
ENSAPLG00000014670
Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038676
10836 - 24269
13434
ENSAPLT00000015351
10836 - 24269
13434