Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_17900_17998_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17900 - 17998

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACG

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTATTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGATGCCTGACA

Flanking Amino Acid:

VGVRVRRPDGEEAVVSSADL

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.4

40.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

82.2

0.72

0.9

73.7

40.5

Minor 5ss

34.3

-1.8

2.8

40.4

45.5

Minor BPS

48.9

-0

2.1

65.03

40.9

Associated Gene:

Gene:

ATP13A2

Ensembl Gene ID:

ENSAPLG00000014670

Chromosome:

PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038676

10836 - 24269

13434

ENSAPLT00000015351

10836 - 24269

13434