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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_18131_18303_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18131 - 18303
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
GTTTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CGTTCCTCACCG
Flanking Amino Acid:
ECMVNESMLTGESVPVMKTP
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
83.7
0.76
0.8
77.8
31
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
52
-0
2
60.32
47.1

Associated Gene:

Gene:
ATP13A2
Ensembl Gene ID:
ENSAPLG00000014670
Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038676
10836 - 24269
13434
ENSAPLT00000015351
10836 - 24269
13434