About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_20096_20616_F


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
20096 - 20616

Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTGGCGTG

5'SS Class:
major

3'SS Sequence:
TGTATCCCCACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AGCTCAC

U12 Branch Point Sequence:
TGTTGGTGAAGC

Flanking Amino Acid:
TTFEEALQLTRDSAESSLTF

Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.9
0.4
1.3
59.2
45.8

Major BPS
61
0.28
1.1
63.1
35.8

Major PPT
72.9
0.52
0.9
65.7
36

Minor 5ss
34.9
-1.7
3.5
46.7
48.8

Minor BPS
42.1
-0.6
2.6
59.68
45.2

Associated Gene:

Gene:
ATP13A2

Ensembl Gene ID:

Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10836 - 24269
13434

10836 - 24269
13434