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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_22601_22776_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22601 - 22776
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TTCTCCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTGGCTGAGAG
Flanking Amino Acid:
QFVSVLLLYTINTNLSDFQF
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81
0.7
0.7
73.1
31.7
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
36.9
-1.1
2.1
36.82
45.1

Associated Gene:

Gene:
ATP13A2
Ensembl Gene ID:
ENSAPLG00000014670
Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038676
10836 - 24269
13434
ENSAPLT00000015351
10836 - 24269
13434