Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_23001_23208_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23001 - 23208

Intron Length:

208

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGGGAC

5'SS Class:

major

3'SS Sequence:

CTGCCTGCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

CCCCTCTGATCC

Flanking Amino Acid:

LSYFITVSQSWYVPLNSTVT

Intron Amino Acid Position:

1090

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.1

60.3

38.8

Major BPS

0.72

38.9

Major PPT

0.32

0.9

61.6

34.9

Minor 5ss

28.6

-2.5

3.7

43.1

Minor BPS

44.7

-0.4

1.7

47.59

42.2

Associated Gene:

Gene:

ATP13A2

Ensembl Gene ID:

ENSAPLG00000014670

Chromosome:

PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038676

10836 - 24269

13434

ENSAPLT00000015351

10836 - 24269

13434