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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006191.1_6686_8644_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6686 - 8644
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GATTTCTAAACT
Flanking Amino Acid:
IMNCTRTCPKGLNPGKAIAE
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
68
0.64
1.7
81.59
39.7

Associated Gene:

Gene:
SDHB
Ensembl Gene ID:
ENSAPLG00000015023
Chromosome:
PEDO01006191.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015686
640 - 8722
8083