Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006192.1_2777_3041_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2777 - 3041

Intron Length:

265

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

TTTTTTTTTGCT

Flanking Amino Acid:

LLAPVNDVFKDKPISVDSNM

Intron Amino Acid Position:

402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

72.1

40.4

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

89.2

0.88

0.7

29.8

Minor 5ss

38.9

-1.2

2.9

49.7

46.6

Minor BPS

45.7

-0.2

3.6

82.93

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026048

Chromosome:

PEDO01006192.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038320

1144 - 21637

20494