Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006194.1_1940_2033_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1940 - 2033

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

TGCCGCCCCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCAAC

U12 Branch Point Sequence:

CCAGCCCCAACG

Flanking Amino Acid:

TVAAFTSIGVGTVLCDIILL

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

66.7

40.4

Major BPS

44.9

-0.3

1.2

Major PPT

61.4

0.26

0.8

54.5

30.9

Minor 5ss

28.3

-2.5

2.7

37.1

Minor BPS

43.5

-0.6

44.94

46.8

Associated Gene:

Gene:

P2RX3

Ensembl Gene ID:

ENSAPLG00000019311

Chromosome:

PEDO01006194.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034083

101 - 2380

2280